NR1D1::MAML3 Fusion in an Aggressive Mesenchymal Neoplasm

First author · Genes Chromosomes Cancer · 2025

NR1D1::MAML3 Fusion in an Aggressive Mesenchymal Neoplasm

2 min read

Context

Mesenchymal tumors (sarcomas) are cancers that arise from connective tissues such as muscle, fat, or fibrous tissue.

In some cases, they can histologically mimic other tumor types, such as carcinomas.

Recently, genetic alterations involving the NR1D1 gene have been described.


What this article shows

This article reports an 85-year-old patient with a sternal mass initially thought to be a cyst on ultrasound.

Combined histological, immunohistochemical, and RNA sequencing analyses revealed an aggressive tumor characterized by an NR1D1::MAML3 fusion.


Histological findings

Histological findings

Histopathologic features of a neoplasm with an NR1D1::MAML3 fusion. Pseudo-cyst with a wall consisting of a dense proliferation of predominantly epithelioid tumor cells (A, H&E, 50× and B, H&E, 300×). Large pale epithelioid cells with oval uniform nuclei and vesicular chromatin (C, H&E, 400×). Spindle cells were observed in some areas, surrounded by a collagenous stroma (D, H&E, 400x). Positive staining for EMA (E, IHC, 300×) and ERG (F, IHC, 400×).

Molecular findings

Molecular findings

Molecular findings in the tumor. NR1D1 (ENST00000246672.4) exon 6 is fused in-frame to MAML3 (ENST00000509479.6) exon 2. The Circos plot illustrates the NR1D1::MAML3 fusion, alongside additional fusion events of uncertain significance (SNORA57::HSPA5 and GLIS3::KSR1), as well as other low-frequency fusion events (fusion fragments per million total reads [FFPM] < 0.1). The NR1D1::MAML3 fusion retains two conserved protein domains of NR1D1: The Zinc finger domain and the Ligand-binding domain of nuclear hormone receptor.

Why it matters

This tumor shows misleading features:

  • on imaging, it mimics a cyst
  • on histology, it resembles a carcinoma

Without molecular analysis, misdiagnosis is likely.

Accurate diagnosis is critical given its aggressive progression, with pleural, pulmonary, and bone metastases developing within one year.


Contribution to knowledge

This study:

  • expands the spectrum of NR1D1-related tumors
  • confirms their aggressive behavior
  • shows that accurate diagnosis of tumors requires integrating morphology and genetics.



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